Artículos científicos

URI permanente para esta colecciónhttp://10.0.96.45:4000/handle/11056/14755

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Anthropogenic imprint on riverine plasmidome diversity and proliferation of antibiotic resistance genes following pollution and urbanization
(Universidad Nacional, Costa Rica, 2025-03-24) Arias-Andrés, María; Barrantes-Jiménez, Kenia
Plasmids are key determinants in microbial ecology and evolution, facilitating the dissemination of adaptive traits and antibiotic resistance genes (ARGs). Although the molecular mechanisms governing plasmid replication, maintenance, and transfer have been extensively studied, the specific impacts of urbanization-induced pollution on plasmid ecology, diversity, and associated ARGs in tropical regions remain underexplored. This study investigates these dynamics in a tropical aquatic ecosystem, providing novel insights into how pollution shapes plasmid composition and function. In contrast to the observed decrease in chromosomal diversity, we demonstrate that pollution associated with urbanization increases the diversity and taxonomic composition of plasmids within a bacterial community (plasmidome). We analyzed eighteen water and sediment metagenomes, capturing a gradient of pollution and ARG contamination along a tropical urban river. Plasmid and chromosomal diversity profiles were found to be anti-correlated. Plasmid species enrichment along the pollution gradient led to significant compositional differences in water samples, where differentially abundant species suggest plasmid maintenance within specific taxonomic classes. Additionally, the diversity and abundance of ARGs related to the plasmidome increased concomitantly with the intensity of fecal and chemical pollution. These findings highlight the critical need for targeted plasmidome studies to better understand plasmids' environmental spread, as their dynamics are independent of chromosomal patterns. This research is crucial for understanding the consequences of bacterial evolution, particularly in the context of environmental and public health.
A case study on pharmaceutical residues and antimicrobial resistance genes in Costa Rican rivers : a possible route of contamination for feline and other species
(Elsevier, 2023-11-12) Vargas-Villalobos, Seiling; Hernández, Felix; Fabregat-Safont, David; Salas-González, Denis; Quesada-Alvarado, Francisco; Botero-Coy, Ana Maria; Esperón, Fernando; Martín-Maldonado, Bárbara; Monrós-González, Juan; Ruepert, Clemens; Estrada-König, Sandra; Rivera-Castillo, Josué; Chaverri-Fonseca, Fabio; Blanco-Peña, Kinndle
In this investigation, the presence of antibiotics and pharmaceuticals in Costa Rican surface waters, specifically in regions near feline habitats, was examined. The study revealed that 47% of the water samples contained detectable traces of at least one antibiotic. Ciprofloxacin and norfloxacin were the most frequently detected compounds, each with a detection rate of 27%. Other antibiotics, such as erythromycin, roxithromycin, and trimethoprim, were also found but at lower frequencies, around 14%. Notably, all antibiotic concentrations remained below 10 ng/L, with ciprofloxacin, norfloxacin, and erythromycin showing the highest concentrations. Furthermore, the investigation revealed the presence of non-antibiotic pharmaceutical residues in the water samples, typically at concentrations below 64 ng/L. Tramadol was the most frequently detected compound, present in 18% of the samples. The highest concentrations were observed for acetaminophen and tramadol, measuring 64 and 10 ng/L, respectively. Comparing these findings with studies conducted in treated wastewater and urban rivers, it became evident that the concentrations of antibiotics and pharmaceuticals were notably lower in this study. While previous research reported higher values, the limited number of studies conducted in protected areas raises concerns about the potential environmental impact on biodiversity. In summary, these results emphasize the importance of monitoring pharmaceutical residues and antimicrobial resistance genes ARGs in vulnerable ecosystems, especially those in close proximity to feline habitats in Costa Rica. Additionally, the study delved into the detection of (ARGs). All tested water samples were positive for at least one ARG, with the blaTEM gene being the most prevalent at 82%, followed by tetS at 64% and qnrB at 23%. Moreover, this research shed light on the complexity of evaluating ARGs in environmental samples, as their presence does not necessarily indicate their expression. It also highlighted the potential for co-selection and coregulation of ARGs, showcasing the intricate behaviors of these genes in aquatic environments.
Pyrimethanil and chlorpyrifos air concentrations and pregnant women’s urinary metabolites in the Infants’ Environmental Health Study (ISA), Costa Rica
(Elsevier, 2022-05-27) Giffin, Andrew; Hoppin, Jane A.; Córdoba, Leonel; Solano, Karla; Ruepert, Clemens; Peñaloza Castañeda, Jorge; Lindh, Christian; Reich, Brian J.; Wendel de Joode, Berna van
Only few studies have compared environmental pesticide air concentrations with specific urinary metabolites to evaluate pathways of exposure. Therefore, we compared pyrimethanil and chlorpyrifos concentrations in air with urinary 4-hydroxypyrimethanil (OHP, metabolite of pyrimethanil) and 3,5,6-trichloro-2-pyridinol (TCPy, metabolite of chlorpyrifos) among pregnant women from the Infant's Environmental Health Study (ISA) in Matina County, Costa Rica. During pregnancy, we obtained repeat urinary samples from 448 women enrolled in the ISA study. We extrapolated pyrimethanil and chlorpyrifos concentrations measured with passive air samplers (PAS) (n = 48, from 12 schools), across space and time using a Bayesian spatiotemporal model. We subsequently compared these concentrationswith urinary OHP and TCPy in 915 samples from 448 women, usingseparatemixed models andconsidering several covariables. A 10% increase in air pyrimethanil (ng/m3) was associated with a 5.7% (95% confidence interval (CI 4.6, 6.8) increase in OHP (μg/L). Women living further from banana plantations had lower OHP: -0.7% (95% CI -1.2, -0.3) for each 10% increase in distance (meters) as well as women who ate rice and beans ≥15 times a week -23% (95% CI -38, -4). In addition, each 1 ng/m3 increase in chlorpyrifos in air was associated with a 1.5% (95% CI 0.2, 2.8) increase in TCPy (μg/L), and women working in agriculture tended to have increased TCPy (21%, 95% CI -2, 49). The Bayesian spatiotemporal models were useful to estimate pyrimethanil and chlorpyrifos air concentrations across space and time. Our results suggest inhalation of pyrimethanil and chlorpyrifos is a pathway of environmental exposure. PAS seems a useful technique to monitor environmental current-use pesticide exposures. For future studies, we recommend increasing the number of locations of environmental air measurements, obtaining all air and urine measurements during the same month, and, ideally, including dermal exposure estimates as well.
The fungicide chlorothalonil changes the amphibian skin microbiome: a potential factor disrupting a host disease-protective trait
(MDPI, 2021-04-08) Jiménez, Randall R.; Alvarado, Gilbert; Ruepert, Clemens; Ballestero, Erick.; Sommer, Simone
The skin microbiome is an important part of amphibian immune defenses and protects against pathogens such as the chytrid fungus Batrachochytrium dendrobatidis (Bd), which causes the skin disease chytridiomycosis. Alteration of the microbiome by anthropogenic factors, like pesticides, can impact this protective trait, disrupting its functionality. Chlorothalonil is a widely used fungicide that has been recognized as having an impact on amphibians, but so far, no studies have investigated its effects on amphibian microbial communities. In the present study, we used the amphibian Lithobates vibicarius from the montane forest of Costa Rica, which now appears to persist despite ongoing Bd-exposure, as an experimental model organism. We used 16S rRNA amplicon sequencing to investigate the effect of chlorothalonil on tadpoles’ skin microbiome. We found that exposure to chlorothalonil changes bacterial community composition, with more significant changes at a higher concentration. We also found that a larger number of bacteria were reduced on tadpoles’ skin when exposed to the higher concentration of chlorothalonil. We detected four presumed Bd-inhibitory bacteria being suppressed on tadpoles exposed to the fungicide. Our results suggest that exposure to a widely used fungicide could be impacting host-associated bacterial communities, potentially disrupting an amphibian protective trait against pathogens.
Bacterial communities in residential wastewater treatmentplants are physiologically adapted to high concentrations of quaternary ammonium compounds
(Universidad Nacional, Costa Rica, 2023-08-28) Chacón, Luz; Rojas-Jimenez, Keilor; Arias-Andres, Maria
Benzalkoniumchloride(BAC)isaquaternaryammoniumcompound(QAC)widely used as the active ingredient of disinfectants. Its excessive discharge into wastewater is constant and in high concentrations, likely affecting the physiology of microbial communities. We compared the physiological community profile of activated sludge (AS) bacteria with and without prior in vitro exposure to a high concentration of BAC(10 mg L−1). We measured the community functional diversity, carbon substrate multifunctionality, and the median effective concentration thatinhibits carbon respiration (EC50) using Biolog EcoPlates supplemented with a gradient of 0–50 mg L−1 of BAC. Surprisingly, we did not find significant differences in the physiological parameters among treatments. Certain abundant bacteria, including Pseudomonas, could explain the community’s tolerance to high concentrations of BAC. We suggest that bacterial communities in wastewater treatment plants’ AS are “naturally” adapted to BAC due to frequent and high-dose exposure. We highlight the need to understand better the effects of QACs in wastewater, their impact on the selection of tolerant groups, and the alteration in community metabolic profiles.
Assessing habitat selection in the prawn Macrobrachium rosenbergii using the model toxicant copper and colonization as a test endpoint: Does prior exposure determine biochemical and behavioral responses?
(Universidad Nacional, Costa Rica, 2024-08-20) Mena, F; Echeverría-Sáenz, Silvia; Brenes-Bravo, Gabriel; Araújo, Cristiano VM; Moreira-Santos, Matilde
Habitat selection by aquatic organisms is dependent on the availability of adequate conditions to support life and the benefits that the habitat provides. Contaminated environments tend to be less attractive to organisms because reduced habitat quality leads to increased maintenance costs. Consequently, reduced colonization of such disturbed habitats is an expected response. However, colonization has been understudied as an ecotoxicological test endpoint, despite its proven ability to assess habitat selection by populations across various taxa. The aim of the present study was to investigate whether previous exposure to copper could alter the colonization behavior of the freshwater prawn Macrobrachium rosenbergii along a non-forced exposure gradient of interconnected copper- contaminated habitats (0 to 500 µg/L) due to physiological and behavioral impairments. To assess this, post- larvae of M. rosenbergii were pre-exposed to 0, 50, 250 and 500 µg/L copper for a maximum period of 48 h. The physiological status and motility of the organisms after pre-exposure to copper were evaluated using behavioral endpoints (swimming activity by video tracking) and biochemical biomarkers (biotransformation, oxidative stress and neurotoxicity). The results indicated that pre-exposure to copper (at concentrations of 0, 50 and 500 µg/L) significantly influenced the median colonization concentration (CC50), which decreased from 270 µg/L to 109 µg/L. None of the assessed swimming parameters (speed, motility rate, exploration rate, and total distance) were affected by the pre-exposure to copper (0, 50 and 250 µg/L). Biochemically, cholinesterase levels were only affected in the prawn population exposed to 250 µg/L of copper. The present study provides a better understanding of the relevance of colonization as an ecotoxicological endpoint for assessing the spatial distribution of populations, including both new inhabitants and previously exposed organisms, in recovering habitats.
A multidisciplinary approach to analyze the antimicrobial resistance in natural ecosystems
(Universidad Nacional, Costa Rica, 2024-02-25) Blanco-Pena, K; Quesada-Alvarado, Francisco; Salas-González, Denis; Chaverri-Fonseca, Fabio
Antimicrobial Resistance (AMR) poses a global threat to both human health and environmental well-being. Our study delved into Costa Rican wildlife reserves, uncovering a substantial human impact on these ecosystems and underscoring the imperative to pinpoint AMR hotspots. Embracing a One Health perspective, we advocated for a comprehensive landscape analysis that intricately intertwined geographic, climatic, forest, and human factors. This study illuminated the link between laboratory results and observed patterns of antimicrobial use, thereby paving the way for sustainable solutions. Our innovative methodology involved deploying open-ended questions to explore antimicrobial usage across livestock activities, contributing to establishing a comprehensive methodology. Non-invasive sampling in wildlife emerged as a critical aspect, shedding light on areas contaminated by AMR. Feline species, positioned at the apex of the food chain, acted as sentinels for environmental health due to heightened exposure to improperly disposed waste. Regarding laboratory findings, each sample revealed the presence of at least one antimicrobial resistance gene (ARG). Notably, genes encoding resistance to tetracyclines dominated (94.9%), followed by beta-lactams (75.6%), sulfonamides (53.8%), aminoglycosides (51.3%), quinolones (44.9%), phenicols (25.6%), and macrolides (20.5%). Genes encoding polymyxins were not detected. Moreover, 66% of samples carried a multi-resistant microbiome, with 15% exhibiting resistance to three antimicrobial families and 51% to four. The absence of a correlation between forest coverage and ARG presence underscored the profound human impact on wildlife reserves, surpassing previous estimations. This environmental pressure could potentially modify microbiomes and resistomes in unknown ways. As not all antimicrobial families encoding ARGs were utilized by farmers, our next step involved evaluating other human activities to identify the primary sources of contamination. This comprehensive study contributed crucial insights into the intricate dynamics of AMR in natural ecosystems, paving the way for targeted interventions and sustainable coexistence.
Sensibilidad de Hydra attenuata e Hydra viridis a los plaguicidas diuron y etoprofos, Costa Rica
(Universidad Nacional, Costa Rica, 2023-09-01) Jones Peñaranda, Caroline; Ugalde, María del Rocío; Jiménez, Katherine; Mena, Freylan; Vargas, Seiling
El objetivo fue determinar cuál de las dos especies de hidras (Hydra attenuata o Hydra viridis) resultaba más sensible a dos plaguicidas, para luego usarla como parte de la batería de organismos de prueba del Laboratorio de Estudios Ecotoxicológicos (ECOTOX). Para esto se utilizaron diluciones de dos de los plaguicidas más comúnmente usados en el cultivo de piña en Costa Rica y detectados en muestras de agua: el herbicida diuron y el insecticida etoprofos. Se realizaron bioensayos de toxicidad con cada una de estas sustancias y con una mezcla de estas. Se registró el estado morfológico de las hidras. Además, se evaluaron la concentración de efecto medio (EC50), la concentración letal media (LC50), y las interacciones de toxicidad según tres posibilidades: antagónica, aditiva o sinérgica. [Resultados] La H. attenuata fue la especie más sensible a ambos plaguicidas, con LC50s de 16,84 mg/L y 103,01 mg/L; y EC50s de 4,24 mg/L y 23,74 mg/L para diuron y etoprofos, respectivamente. Mientras tanto la H. viridis tuvo LC50s de 36,94 mg/L y 103,01 mg/L, con EC50s de 13,64 mg/L y 53,12 mg/L, también para diuron y etoprofos, respectivamente. La exposición a la mezcla de plaguicidas solo causó mortalidad a la H. viridis y tuvo efecto sinérgico en ambas especies. Estos resultados sugieren que la H. attenuata es la especie más apropiada para la evaluación de efectos de plaguicidas, pero se deben realizar más estudios sobre las interacciones de los contaminantes en mezclas, porque estas pueden modificar su toxicidad para diferentes especies.
The Impact of Urban Pollution on Plasmid-Mediated Resistance Acquisition in Enterobacteria from a Tropical River
(Universidad Nacional, Costa Rica, 2024-11-14) Mendoza Guido, Bradd; Arias Andres, Maria; Barrantes, Kenia; Rodrıguez, Cesar; Rojas-Jimenez, Keilor
The exposure of environmental bacteria to contaminants in aquatic ecosystems accelerates the dissemination of antibiotic-resistance genes (ARGs) through horizontal gene transfer (HGT). In this study, we sampled three locations along a contamination gradient of a polluted river, focusing on isolating Enterobacteria from the surface waters to investigate the relationship between urban pollution and antibiotic resistance. The genomes of 15 isolates (5 per site) were sequenced to identify plasmid-borne ARGs and their association with resistance phenotypes. Results: Isolates from the site with the highest contamination (Site 3) showeda larger number of ARGs, plasmids, and resistance phenotypes. Notably, one of the isolates analyzed, E. coli A231-12, exhibited phenotypic resistance to seven antibiotics, presumably conferred by a single plasmid carrying 12 ARGs. Comparative analysis of this plasmid revealed its close evolutionary relationship with another IncH plasmid hosted by Salmonella enterica, underscoring its high ARG burden in the aquatic environment. Other plasmids identified in our isolates carried sul and dfrA genes, conferring resistance to trimethoprim/sulfamethoxazole, a commonly prescribed antibiotic combination in clinical settings. These results highlight the critical need to expand research on the link between pollution and plasmid-mediated antimicrobial resistance in aquatic ecosystems, which can act as reservoirs of ARGs.
Benchmarking AI-based Plasmid Annotation Tools for Antibiotic Resistance Genes Mining From Metagenome of the Virilla River, Costa Rica
(Universidad Nacional, Costa Rica, 2023-11-28) Rojas-Villalta, Dorian; Calderón-Osorno, Melany; Barrantes, Kenia; Arias-Andres, Maria; Rojas-Jiménez, Keilor
Bioinformatics and Artificial Intelligence (AI) stand as rapidly evolving tools that have facilitated the annotation of mobile genetic elements (MGEs), enabling the prediction of health risk factors in polluted environments, such as antibiotic resistance genes (ARGs). This study aims to assess the performance of four AI-based plasmid annotation tools (Plasflow, Platon, RFPlasmid, and PlasForest) by employing defined performance parameters for the identification of ARGs in the metagenome of one sediment sample obtained from the Virilla River, Costa Rica. We extracted and sequenced complete DNA from the sample, assembled the metagenome, and then performed the plasmid prediction with each bioinformatic tool, and the ARGs annotation using the Resistance Gene Identifier web portal. Sensitivity, specificity, precision, negative predictive value, accuracy, and F1-score were calculated for each ARGs prediction result of the evaluated plasmidomes. Notably, Platon emerged as the highest performer among the assessed tools, exhibiting exceptional scores. Conversely, Plasflow seems to face difficulties distinguishing between chromosomal and plasmid sequences, while PlasForest has encountered limitations when handling small contigs. RFPlasmid displayed diminished specificity and was outperformed by its taxon-dependent workflow. We recommend the adoption of Platon as the preferred bioinformatic tool for resistome investigations in the taxon-independent environmental metagenomic domain. Meanwhile, RFPlasmid presents a compelling choice for taxon-dependent prediction due to its exclusive incorporation of this approach. We expect that the results of this study serve as a guiding resource in selecting AI-based tools for accurately predicting the plasmidome and its associated genes.
Pesticide use in banana plantations in Costa Rica - A review of environmental and human exposure, effects and potential risks.
(Elsevier, 2023) Bruhl, Carsten A.; Arias Andrés, María; Echeverría Sáenz, Silvia; Bundschuh, Mirco; Knabel, Anja; Mena, Freylan; Petschick, Lara L.; Ruepert, Clemens; Stehle. Sebastian
Biodiversity is declining on a global scale. Especially tropical ecosystems, containing most of the planetary biodiversity, are at risk. Agricultural monocrop systems contribute to this decline as they replace original habitats and depend on extensive use of synthetic pesticides that impact ecosystems. In this review we use large-scale banana production for export purposes in Costa Rica as an example for pesticide impacts, as it is in production for over a century and uses pesticides extensively for more than fifty years. We summarise the research on pesticide exposure, effects and risks for aquatic and terrestrial environment, as well as for human health. We show that exposure to pesticides is high and relatively well studied for aquatic systems and humans, but hardly any data are available for the terrestrial compartment including adjacent non target ecosystems such as rainforest fragments. Ecological effects are demonstrated on an organismic level for various aquatic species and processes but are not available at the population and community level. For human health studies exposure evaluation is crucial and recognised effects include various types of cancer and neurobiological dysfunctions particularly in children. With the many synthetic pesticides involved in banana production, the focus on insecticides, revealing highest aquatic risks, and partly herbicides should be extended to fungicides, which are applied aerially over larger areas. The risk assessment and regulation of pesticides so far relies on temperate models and test species and is therefore likely underestimating the risk of pesticide use in tropical ecosystems, with crops such as banana. We highlight further research approaches to improve risk assessment and, in parallel, urge to follow other strategies to reduce pesticides use and especially hazardous substances.
Contributions of the academy for a better understanding of the oceans in Costa Rica
(Universidad Nacional, Costa Rica, 2024-03) Morales-Ramírez, Álvaro; Gómez-Ramírez, Eddy; Alfaro-Martínez, Eric; Hidalgo, Hugo G.; Ulate-Naranjo, Karol; Arias-Andres, Maria; Rojas-Villalobos, Fresia; Samper-Villarreal, Jimena; Wehrtmann, Ingo S.
El lanzamiento de la Década de los Océanos en el año 2017 estableció nuevas visiones entre la ciencia y política, para fortalecer la investigación y la gestión de los océanos y las costas. Con un 92% de superficie marina, Costa Rica es una nación de mar, que posee una gran diversidad marina, y que realiza esfuerzos para conocer mejor sus recursos costeros y marinos. En los últimos 20 años, se han desarrollado políticas para promover la gestión integrada de nuestras zonas costeras y la creación de áreas marinas protegidas. Mediante la investigación de las universidades públicas, conocemos mejor, aunque de manera incompleta, cómo se encuentran nuestros recursos pesqueros y acuicultura, los impactos de la contaminación marina y sus efectos sobre organismos y ecosistemas, los impactos del cambio climático, así como los esfuerzos para impulsar la conservación marina y la restauración de los ecosistemas marino-costeros y sus servicios. Del análisis de estas áreas de estudios, es evidente, que existen vacíos de información que deben ser abordados para generar más información científica que permita la toma de decisiones adecuadas y basadas en la ciencia, con el objeto de mejorar las políticas púbicas relacionadas a las zonas costeras, sus recursos, los servicios ecosistémicos, la gestión de las numerosas fuentes de contaminación continental que llegan a la costa y la adaptación al cambio climático.
Identification of anthropogenic impact on natural habitats by antimicrobial resistance quantification in two neotropical wild cats and their geospatial analysis
(Universidad Nacional, Costa Rica, 2023) Angulo, A.; Fajardo, F.; Salom-Pérez, Roberto; Carazo Salazar, Javier; Taylor, Francisco; Pilé, Edwin; Quesada-Alvarado, Francisco; Blanco- Peña, Kinndle
Human activities such as habitat degradation and fragmentation threaten biodiversity in Neotropical areas. This work proposes an analytical methodology to identify natural areas in Central America with anthropogenic impact, analyzing the presence of antimicrobial resistance genes (ARGs) in accordance with their theoretical relationship with human-related activities. Sixteen ARGs were quantified in feces of different individuals of 13 jaguars (Panthera onca) and 13 pumas (Puma concolor) in three conservation areas in Costa Rica by real-time PCR. At least one ARG was detected in all samples. Of the ARGs encoding tetracycline resistance, the most frequent were tetQ and tetY (85% and 69%, respectively). The sulfonamides (sulI and sulII; 69% each), phenicols (catI and catII; 19% and 54%, respectively), and quinolones (qnrS; 12%) were also detected. The presence of human settlements, livestock farms (pigs, cattle, and poultry), roads, human health centers, flood zones, and rivers were identified within each area to generate an index of human activity. We found no difference between the presence of ARG by roads, agricultural activities, and human settlements (P.0.05). However, tetW showed higher percentages with porcine and bovine farms; both tetY and tetW were more frequent in jaguars than in pumas. Of concern is that many of the most contaminated samples were taken from national parks, such as Braulio Carrillo and Tortuguero, where animals should not have direct contact with humans.
Short-term exposure to benzalkonium chloride in bacteria from activated sludge alters the community diversity and the antibiotic resistance profile
(Universidad Nacional, Costa Rica, 2021) Chacón, L.; Arias-Andrés, M.; Mena, F.; Rivera, L.; Hernández, L.; Achi, R.; Garcia, F.; Rojas-Jiménez, K.
La introducción continua de productos de limpieza que contienen cloruro de benzalconio (BAC) procedente de vertidos domésticos puede moldear las comunidades microbianas de las plantas de tratamiento de aguas residuales (EDAR) de una forma aún poco conocida. En este estudio, realizamos una exposición in vitro de lodos activados de una EDAR de Costa Rica a BAC, cuantificamos los cambios en los perfiles génicos intI1, sul2 y qacE/qacEΔ1, y determinamos alteraciones en la composición de la comunidad bacteriana. El análisis de los datos de qPCR reveló elevadas cargas de genes de resistencia a antibióticos en la comunidad microbiana; tras la exposición a BAC se observó un aumento significativo del gen qacE/qacEΔ1, relacionado con la resistencia al cuaternario de amonio. El análisis de las secuencias del gen 16S rRNA mostró variaciones pronunciadas en la estructura de las comunidades bacterianas, incluyendo una reducción de los valores de diversidad alfa y un aumento de la abundancia relativa de Alphaproteobacteria, particularmente de Rhodospseudomonas y Rhodobacter. Confirmamos que las comunidades microbianas presentaban una alta resiliencia al BAC en la concentración de mg/mL, probablemente debido a la exposición constante a este contaminante. También presentaron genes relacionados con la resistencia a antibióticos con mecanismos similares para tolerar esta sustancia. Estos mecanismos deberían explorarse más a fondo, especialmente en el contexto de un elevado uso de desinfectante.
The description of Anacroneuria suerre sp. nov. from Costa Rica (Plecoptera: Perlidae) and using nymphs in ecotoxicological studies
(Magnolia Press, 2019-05-20) Gutiérrez-Fonseca, Pablo E.; Echeverría-Sáenz, Silvia; Bravo, Francisco; Romero, David
The lack of nymph-adult associations limits our knowledge of the ecology, history and sensitivity of aquatic insects. In this study, the new species, Anacroneuria suerre sp. nov is described from Costa Rica based on the male, female, and nymphal stages. We briefly discuss the use of Plecoptera in ecotoxicological studies.
A biogeochemical comparison of three representative lakes of Costa Rica
(Instituto Regional de Estudios en Sustancias Tóxicas, 2025-06-09) Esquivel-Hernández, Germain; Sánchez-Gutiérrez, Rolando; Arias, M.; Ugalde-Salazar, Rocío; Echeverría- Sáenz, Silvia
Lakes are widely distributed across Costa Rica, from coasts to the highest elevation regions and located in the main terrestrial biomes, yet updated biogeochemical information about the main types of lakes is still lacking. We present comparative biogeochemistry (water chemistry, stable isotopes, and picoplankton) for a coastal lake (Lake Madre de Dios), a volcanic lake (Lake Barva), and a glacial lake (Lake Ditkevi). Sampling was conducted between February and November 2022, including dry and rainy seasonal conditions. Hydrological and chemical conditions were evaluated using water and carbon stable isotopes, dissolved organic matter, major ions, and microbiota analysis. Isotopic data on water (δ2H and δ18O) and dissolved inorganic carbon (δ13CDIC) confirmed lower evaporative losses for the maar and tarn lakes and productivity response to precipitation inputs. Excitation/emission matrices confirmed the prevalence of fulvic and humic acids in the coastal and glacial lakes, mainly aromatic proteins and soluble microbial byproducts in the volcanic lake. Picophytoplankton (PPP, ∼0.2–10 μm) was mainly represented by phycocyanin-rich picocyanobacteria in the 3 lakes, but maar and tarn lakes had greater representation of phycoerythrin-rich picocyanobacteria. We confirmed fluctuations in PPP cell abundance in the lakes was lower than in comparable temperate lakes. For other eutrophic lakes, abundance of picocyanobacteria dominated over picoeukaryotic algae. This work aimed to promote an ecosystem approach to study the biogeochemical functioning of tropical lakes using a combination of chemical, hydrological, and biological data and to provide baseline information for future studies (e.g., climate change and pollution impacts) on tropical lakes of Costa Rica.
Dissimilar behavioral and spatial avoidance responses by shrimps from tropical and temperate environments exposed to copper
(Universidad Nacional, Costa Rica, 2022-11-17) Redondo, Sergei; González, E.; Mena, F.; Araújo, Cristiano
Behavioral changes associated with exposure to pollutants represent the earliest response for organisms confronted by perceivable chemical signals. This study was carried out with the objective of evaluating behavioral responses associated with different scenarios of exposure to pollutants (non-forced vs forced) in two shrimp species (Penaeus vannamei and Palaemon varians), representative of different latitudes and using copper as a model contaminant. The effects on locomotion were evaluated by exposing the shrimps to a range of copper concentrations (0, 0.5, 5, 50, and 250 µg/L) in the forced scenario. After exposure, the movement patterns for each shrimp were recorded and used to estimate changes in the shrimps’ locomotion. For the non-forced scenario, the avoidance response was assessed by placing shrimps in a multi-compartment system where they were able to move freely along a gradient of copper (0, 0.5, 5, 50, and 250 µg/L). In terms of locomotion, an opposite trend was observed between the species: movements were significantly reduced in P. varians with concentrations above 50 µg/L, while hyperactivity was observed for P. vannamei. When exposed to a gradient of copper in the multi-compartment system, both species significantly avoided the highest concentrations of copper, although the repellence of copper was stronger for P. vannamei. In summary, both species of shrimps were able to recognize and avoid copper; however, in terms of locomotion, they showed an opposite behavioral reaction. These results show that a contamination event can have different behavioral outcomes depending on the species and complementing forced and non-forced exposure with species-specific information can be helpful to characterize and predict the effects of contaminants at higher biological levels.
Effects of the insecticide β-endosulfan on tadpoles of Isthmohyla pseudopuma (Anura: Hylidae)
(Universidad Nacional, Costa Rica, 2022) Méndez, M.; Mena, Freylan; Pinnock Branford, Margaret Verónica; Ruepert, Clemens
Conventional agriculture uses pesticides intensively. Once pesticides are released into the environment, they can be toxic to non-target organisms. Exposure of amphibians to pesticides can be lethal and affect their growth, development and behavior. β-endosulfan is a persistent organochlorine that has been detected in environmental samples within protected sites in Costa Rica, far from agricultural areas. The aim of this study was to evaluate the lethal and sublethal effects, as well as changes in three biomarkers (Cholinesterase activity [ChE], glutathione S- transferase activity [GST] and lipid peroxidation [LPO]) in tadpoles of Isthmohyla pseudopuma exposed to β-endosulfan. A 96-h acute test (20, 40, 60, 80, 100 and 200 µg/L) was performed in order to calculate the median lethal concentration (LC 50 ), while effects on growth and development were assessed during a 4-weeks chronic test (10, 20, 30 and 50 µg/L). In addition, we measured the aforementioned biomarkers in tadpoles exposed to concentrations below the LC 50 . The 96-h LC 50 for this species was 123.6 µg/L. We found no evidence of β-endosulfan influencing any of the three biomarkers evaluated. At 50 µg/L, both length and total weight of tadpoles decreased with respect to the control. Also, at 30 and 50 µg/L we observed that individuals showed a slower development. Therefore, we demonstrated that at sublethal concentrations, β-endosulfan negatively affects I. pseudopuma at early stages causing tadpoles to develop slower and smaller than normal.
TIER I Toxicity assessment Toxicity assessment of pesticides used in banana and pineapple plantations detected on the Río Madre de Dios watershed, Costa Rica
(Universidad Nacional, Costa Rica, 2014) Arias, M; Mena-Torres, F.; Ugalde, R.; Ramo, R.; Grandas, L.; Ruepert, Clemens
The influence of depth on the global deep-sea plasmidome
(Scientific Reports, 2025-01-26) Arias- Andrés, Maria; Calderón Osorno, Melany; Cortés, Jorge; Rojas-Villalta, Dorian; Lejzerowicz, Franck; Rojas-Jimenez, Keilor
Plasmids play a crucial role in facilitating genetic exchange and enhancing the adaptability of microbial communities. Despite their importance, environmental plasmids remain understudied, particularly those in fragile and underexplored ecosystems such as the deep-sea. In this paper we implemented a bioinformatics pipeline to study the composition, diversity, and functional attributes of plasmid communities (plasmidome) in 81 deep-sea metagenomes from the Tara and Malaspina expeditions, sampled from the Pacific, Atlantic, and Indian Oceans at depths ranging from 270 to 4005 m. We observed an association between depth and plasmid traits, with the 270–1000 m range (mesopelagic samples) exhibiting the highest number of plasmids and the largest plasmid sizes. Plasmids of Alphaproteobacteria and Gammaproteobacteria were predominant across the oceans, particularly in this depth range, which also showed the highest species diversity and abundance of metabolic pathways, including aromatic compound degradation. Surprisingly, relatively few antibiotic resistance genes were found in the deep-sea ecosystem, with most being found in the mesopelagic layer. These included classes such as beta-lactamase, biocide resistance, and aminoglycosides. Our study also identified the MOBP and MOBQ relaxase families as prevalent across various taxonomic classes. This research underscores the importance of studying the plasmidome independently from the chromosomal context. Our limited understanding of the deep-sea’s microbial ecology, especially its plasmidome, necessitates caution in human activities like mining. Such activities could have unforeseen impacts on this largely unexplored ecosystem.

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